Have a personal or library account? Click to login
Decomposition study of in vivo phytoplankton absorption spectra aimed at identifying the pigments and the phytoplankton group in complex case 2 coastal waters of the Arabian Sea Cover

Decomposition study of in vivo phytoplankton absorption spectra aimed at identifying the pigments and the phytoplankton group in complex case 2 coastal waters of the Arabian Sea

Oceanological and Hydrobiological Studies
Volume 44 (2015): Issue 3 (September 2015)
By: S. S. Shaju,  P. Minu,  A. S. Srikanth,  P. Muhamed Ashraf,  A. K. Vijayan and  B. Meenakumari  
Open Access
|Sep 2015

References

  1. Aguirre-Goméz, R., Weeks A.R. & Boxall S.R. (2001). The identification of phytoplankton pigments from absorption spectra. Int. J. Remote. Sens. 22 (2 & 3): 315 - 338.
    Search in Google Scholar
  2. Babin, M., Stramski, D., Ferrari G.M., Claustre, H., Bricaud A., Obolensky, G. & Hoepffner, N. (2003). Variations in the light absorption coefficients of phytoplankton, nonalgal particles and dissolved organic matter in coastal waters around Europe. J. Geophys. Res. 108 (C7): 3211.
    Search in Google Scholar
  3. Baird, M.E., Ralph, P.J., Wild-Allen, K., Rizwi, F. & Steven, A.D.L. (2013). A dynamic model of the cellular carbon to chlorophyll ratio applied to a batch culture and a continental shelf ecosystem. Limnol. Oceanogr. 58: 1215-1226.
    Search in Google Scholar
  4. Bigidare, R.R., Morrow, J.H., & Kiefer D.A. (1989a). Derivative analysis of spectral absorption by photosynthetic pigments in the Eastern Sargasso Sea. J. Mar. Res. 47: 323 - 341.10.1357/002224089785076325
    Search in Google Scholar
  5. Bidigare, R.R., Schofield, O. & Prezelin, B.B. (1989b) Influence of zeaxanthin on quantum yield of photosynthesis of Synechococcus clone WH7803 (DC2), Mar. Ecol. Prog. Ser. 56: 177-188.10.3354/meps056177
    Search in Google Scholar
  6. Bricaud, A., Claustre, H., Ras, J. & Oubelkheir, K. (2004).
    Search in Google Scholar
  7. Natural variability of phytoplanktonic absorption in oceanic waters: Influence of the size structure of algal populations, J. Geophys. Res. 109: C11010. DOI: 10.1029/2004JC002419.10.1029/2004JC002419
    Search in Google Scholar
  8. Bricaud, A., Ciotti, A.M., & Gentili B. (2012). Spatial-temporal variations in phytoplankton size and colored detrital matter absorption at global and regional scales, as derived from twelve years of SeaWiFS data (1998-2009). Global Biogeochem. Cycles. 26: GB1010. DOI: 10.1029/2010GB003952.10.1029/2010GB003952
    Search in Google Scholar
  9. Chase, A., Boss, E., Zanevel, R., Bricaud, A., Claustre, H., Ras, J., Dall’Olmo, G. & Westberry T.K. (2013). Decomposition of in situ particulate absorption spectra. Methods in Oceanography. 7: 110-124. DOI: 10.1016/j.mio.2014.02.002.10.1016/j.mio.2014.02.002
    Search in Google Scholar
  10. Ciavatta, S., Torres, R., Martinez-Vicente, V., Smyth, T., Dall’Olmo, G., Polimene, L. & Allen J. (2014). Assimilation of remotely-sensed optical properties to improve marine biogeochemistry modeling. Prog. Oceanogr. DOI: 10.1016/j. pocean.2014.06.002.
    Search in Google Scholar
  11. Cleveland, J.B.S. & Weidemann A.D. (1993). Quantifying absorption by aquatic particles: A multiple scattering correction for glass-fiber filters. Limnol. Oceanogr. 38: 1321-1327.
    Search in Google Scholar
  12. Cleveland, J.S. (1995). Regional models for phytoplankton absorption as a function of chlorophyll a concentration. J. Geophys. Res.: Oceans. 100(C7), 13333-13344.10.1029/95JC00532
    Search in Google Scholar
  13. Coupel, P., Matsuoka, A., Ruiz-Pino, D., Gosselin, M., Claustre, H., Marie, D., Tremblay, J.-E., & Babin, M. (2014). Pigment signatures of phytoplankton communities in the Beaufort Sea. Biogeosciences Discuss. 11:14489-14530. DOI:10.5194/ bgd-11-14489-2014.
    Search in Google Scholar
  14. Faust, M.A. & Norris, H.A. (1985). In vivo spectrophotometric analysis of photosynthetic pigments in natural populations of phytoplankton. Limnol. Oceanog. 30(6): 985, 1316-1322.10.4319/lo.1985.30.6.1316
    Search in Google Scholar
  15. Ferreira, A.D., Stramski, D., Garcia, C.A.E., Garcia, V.M.T., Ciotti, A.M. & Mendes, C.R.B. (2013). Variability in light absorption and scattering of phytoplankton in Patagonian waters: Role of community size structure and pigment composition. J. Geophys. Res.: Oceans. 118: 698-714.
    Search in Google Scholar
  16. Fujiki, T. & Taguchi S. (2002). Variability in chlorophyll alpha specific absorption coefficient in marine phytoplankton as a function of cell size and irradiance. J. Plank. Res. 24: 859-874.
    Search in Google Scholar
  17. Gómez, R.A., Weeks, A.R. & Boxall, S.R. (2001). The identification of phytoplankton pigments from absorption spectra. Int. J. Remote Sens. 22: 315-338
    Search in Google Scholar
  18. Hsiu-Ping, L., Gwo-Ching, G. & Tung-Ming, H. (2002). Phytoplankton pigment analysis by HPLC and its application in algal community investigations. Bot. Bull. Acad. Sin. 43: 283 -290.
    Search in Google Scholar
  19. Hoepffner, N., & Sathyendranath S. (1993). Determination of the major groups of phytoplankton pigments from the absorption spectra of total particulate matter. J. Geophys. Res. 98 (C12): 22789-22803.
    Search in Google Scholar
  20. IOCCG. (2000). Remote Sensing of Ocean Colour in Coastal, and Other Optically-Complex, Waters, In S. Sathyendranath [ed.], Reports of the International Ocean Colour Coordinating Group 3.
    Search in Google Scholar
  21. Jyothibabu, R., Madhu, N.V., Jayalakshmi, K.V., Balachandran, K.K., Shiyas, C.A., Martin, G.D. & Nair K.K.C. (2006). Impact of freshwater influx on microzooplankton mediated food web in a tropical estuary (Cochin backwaters - India). Est. Coast. Shelf Sci. 69: 505- 518.
    Search in Google Scholar
  22. Jeffrey, S.W. & Vesk, M. (1997). Introduction to marine phytoplankton and their pigment signatures. In Jeffrey, S.W., Mantoura, R.F.C. & Wright S.W. (Eds.), Phytoplankton Pigments in Oceanography (pp37-84).UNESCO, Paris.
    Search in Google Scholar
  23. Kan, K.S. & Thornber, J.P. (1976). The light-harvesting chlorophyll a/b-protein complex of Chlamydomonas reinhardi. Plant Physiol. 57: 47-52.
    Search in Google Scholar
  24. Kishino, M., Takahashi, M., Okami, N. & Ichimura, S. (1985). Estimation of the spectral absorption coefficients of phytoplankton in the sea. Bull. Mar. Sci. 37: 634-642.
    Search in Google Scholar
  25. Kishino, M., Okami, N., Takahashi, M. & Ichimura, S. (1986). Light utilization efficiency and quantum yield of phytoplankton in a thermally stratified sea. Limnol. Oceanogr. 31: 557-566.
    Search in Google Scholar
  26. Kyewalyanga, M.N., Platt, T., Sathyendranath, S., Lutz, V.A. & Stuart, V. (1998). Seasonal variations in physiological parameters of phytoplankton across the North Atlantic. J. Plank. Res. 20: l7- 42.
    Search in Google Scholar
  27. Louchard, E.M., Reid, R.P., Stephens, C.F., Davis, C.O., Leathers, R.A., Downes, T.V. & Maffione, R. (2002). Derivative analysis of absorption features in hyperspectral remote sensing data of carbonate sediments. Opt. Express.,10(26): 1573 - 1584.
    Search in Google Scholar
  28. Mann, J.E. & Myers J. (1986). On pigments, growth and photosynthesis of Phaeodactylum tricornutum. J. Phycol. 4: 349-355.
    Search in Google Scholar
  29. Maske, H. & Haardt, H. (1987). Quantitative in vivo absorption spectra of phytoplankton: Detrital absorption and comparison with fluorescence excitation spectra. Limnol. Oceanogr. 32: 620-633.
    Search in Google Scholar
  30. Mao, Z., Stuart, V., Pan, D., Chen, J., Gong, F., Huang, H. & Zhu, Q. (2010). Effects of phytoplankton species composition on absorption spectra and modeled hyperspectral reflectance. Ecological Informatics. 5: 359-366.
    Search in Google Scholar
  31. Millie, D.F., Kirkpatrick, G.J., Vinyard, B.T. (1995). Relating photosynthetic pigments and in vivo optical density spectra to irradiance for the Florida red-tide dinoflagellate Gymnodinium breve. Mar. Ecol. Prog. Ser. 120: 65-75.
    Search in Google Scholar
  32. Millie, D.F., Schofield, O., Kirkpatrick, G.J., Johnsen, G., Tester, P.A. & Vinyard, B.T. (1997). Phytoplankton pigments and absorption spectra as potential ‘Biomarkers’ for harmful algal blooms: a case study of the Florida red-tide dinoflagellate, Gymnodinium breve. Limnol. Oceanogr . 42:1240-1251.
    Search in Google Scholar
  33. Minu, P, Shaju, S.S., Ashraf, P.M. & Meenakumari, B. (2014). Phytoplankton community characteristics in the coastal waters of southeastern Arabian sea. Acta Oceanol. Sin. 33(12): 170-179.
    Search in Google Scholar
  34. Mitchell, B.G. & Kiefer D.A. (1988). Variability in pigment specific particulate fluorescence and absorption spectra in the northeastern Pacific Ocean. Deep-Sea Res. 35: 665-689.
    Search in Google Scholar
  35. Mitchell, B.G. (1990). Algorithms for determining the absorption coefficient of aquatic particulates using the quantitative filter technique (QFT). Ocean Optics. 1302: 137-148.
    Search in Google Scholar
  36. Morel, A. (1988). Optical modeling of the upper ocean in relation to its biogenous matter content (case I waters). J. Geophys. Res, 93: 10749-10768.
    Search in Google Scholar
  37. Morel, A & Bricard, A. (1981). Theoretical results concerning light absorption in discrete medium, and application to specific absorption of phytoplankton, Deep-Sea Res. Part A. 28A: 1375-1393.
    Search in Google Scholar
  38. Ong, L.J., Glazer, A.N., & Waterbury J.B. (1986). An unusual phycoerythrin from a marine cyanobacterium, Science. 224: 80- 83.
    Search in Google Scholar
  39. Prezelin, B.B. & Alberte, R.S. (1978). Photosynthetic characteristics and organization of chlorophyll in marine dinoflagellates. Proc.Nat. Acad. Sci. USA. 75: 1801-1804.
    Search in Google Scholar
  40. Roesler, C.S. & Barnard A.H. (2014). Optical proxy for phytoplankton biomass in the absence of photophysiology: Rethinking the absorption line height. Methods in Oceanography. 7; 79-94. DOI: 10.1016/j.mio.2013.12.003.10.1016/j.mio.2013.12.003
    Search in Google Scholar
  41. Rosado-Torres, M.A. (2008) Evaluation and development of biooptical algorithms for chlorophyll retrieval in western Puerto Rico. Ph.D thesis. University of Puerto Rico, Puerto Rico.
    Search in Google Scholar
  42. Savitzky, A. & Golay, M.J.E. (1964). Smoothing and differentiation of data by simplified least squares procedures. Anal. Chem.36: 1627 - 1639.
    Search in Google Scholar
  43. Shaw, P.J. & Purdie, D.A. (2001). Phytoplankton photosynthesisirradiance parameters in the near-shore UK coastal waters of the North Sea: temporal variation and environmental control. Mar. Ecol. Prog. Ser. 216: 83-94.
    Search in Google Scholar
  44. Stramski, D., Babin, M. & Woz´niak, S.B. (2007). Variations in the optical properties of terrigenous mineral-rich particulate matter suspended in seawater. Limnol. Oceanogr. 52(6): 2418-2433.
    Search in Google Scholar
  45. Suzuki, K., Handa, N., Kiyosawa, H. & Ishizaka, J. (1997). Temporal and spatial distribution of phytoplankton pigments in the central Pacific Ocean along 175°E during the boreal summers of 1992 and 1993. J. Oceanogr. 53: 386 - 393.
    Search in Google Scholar
  46. Suzuki, K., Hattori-Saito, A., Sekiguchi, Y., Nishioka, J., Shigemitsu, M., Isada, T., Liu, H., & McKay R.M.L. (2014). Spatial variability in iron nutritional status of large diatoms in the Sea of Okhotsk with special reference to the Amur River discharge. Biogeosciences. 11; 2503-2517. DOI:10.5194/bg-11-2503-2014.10.5194/bg-11-2503-2014
    Search in Google Scholar
  47. Tomas, C.R. (1997). Identifying marine phytoplankton, New York: Academic Press, USA.
    Search in Google Scholar
  48. Tzortziou, M., Subramaniam, A., Herman, J., Gallegos, C., Neale, P., & Hardingjr, L. (2007). Remote sensing reflectance and inherent optical properties in the mid Chesapeake Bay. Estuar. Coast. Shelf. Sci. 72: 16-32.
    Search in Google Scholar
  49. Vijayan, A.K. & Somayajula, S.A. (2014). Effect of accessory pigment composition on the absorption characteristics of dinoflagellate bloom in a coastal embayment. Oceanologia. 56(1): 107-124.
    Search in Google Scholar
DOI: https://doi.org/10.1515/ohs-2015-0027 | Journal eISSN: 1897-3191 | Journal ISSN: 1730-413X
Journal RSS Feed
Language: English
Page range: 282 - 293
Submitted on: Nov 20, 2014
|
Accepted on: Mar 18, 2015
|
Published on: Sep 30, 2015
Published by: University of Gdańsk
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year
Keywords:
Total particulate absorption,
phytoplankton specific absorption coefficient,
packaging effect,
derivative analysis
Related subjects:
Chemistry,
Chemistry, other,
Geosciences,
Geosciences, other,
Life sciences,
Life sciences, other

© 2015 S. S. Shaju, P. Minu, A. S. Srikanth, P. Muhamed Ashraf, A. K. Vijayan, B. Meenakumari, published by University of Gdańsk
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Volume 44 (2015): Issue 3 (September 2015)Next article