In silico characterization of Echinococcus granulosus paramyosin nucleotide sequence for the development of epitope vaccine against cystic echinococcosis
By:
References
- Ben, Y.T., Arnon, R. (2005): Towards an epitope-based human vaccine for influenza. Hum. Vaccin., 1(3): 95 – 101
- Calis, J.J., Maybeno, M., Greenbaum, J.A., Weiskopf, D., De-Silva, A.D., Sette, A., Kesmir, C., Peters, B. (2013): Properties of MHC class I presented peptides that enhance immunogenicity. PLoS Comput. Biol., 9(10): e1003266. DOI: 10.1371/journal.pcbi.100326610.1371/journal.pcbi.1003266
- Cohen, C. (1982): Matching molecules in the catch mechanism. Proc. Natl. Acad. Sci. USA, 79: 3176 – 317810.1073/pnas.79.10.3176
- Eckert, J., Conraths, F.J., Tackmann, K. (2000): Echinococcosis: an emerging or re-emerging zoonosis? Int. J. Parasitol., 30(12 – 13): 1283 – 129410.1016/S0020-7519(00)00130-2
- Emini, E.A., Hughes, J.V., Perlow, D.S., Boger, J. (1985): Induction of hepatitis A virus-neutralizing antibo dy by a virus-specific synthetic peptide. J. Virol., 55(3): 836–839.10.1128/jvi.55.3.836-839.1985
- Ferrer, E., Moyano, E., Benitez, L., Gonzalez, L. M., Bryce, D., Foster-Cuevas, M., Davila, L., Cortez, M.M., Harrison, L.J., Parkhouse, R.M., Garate, T. (2003): Cloning and characterization of Taenia saginata paramyosin cDNA. Parasitol. Res., 91(1): 60 – 67. DOI: 10.1007/s00436-003-0895-510.1007/s00436-003-0895-5
- Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S.E., Wilkins, M.R., Appel, R.D., Bairoch, A. (2005): Protein identification and analysis tools on the ExPASy Server. In: Walker, J. M. (Ed) The Proteomics Protocols Handbook. Humana Press, pp 571 – 60710.1385/1-59259-890-0:571
- Geourjon, C., Deléage, G. (1995): SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Comput. Appl. Biosci., 11: 681 – 684
- Gobert, G.N., Mcmanus, D.P. (2005): Update on paramyosin in parasitic worms. Parasitol. Int., 54: 101–107. DOI: 10.1016/j.parint.2005.02.00410.1016/j.parint.2005.02.004
- Jiz, M.A., Wu, H., Olveda, R., Jarilla, B., Kurtis, J.D. (2015): Development of paramyosin as a vaccine candidate for schistosomiasis. Front. Immunol., 6: 347. DOI: 10.3389/fimmu.2015.0034710.3389/fimmu.2015.00347
- Katoh, Y., Kouguchi, H., Matsumoto, J., Goto, A., Suzuki, T., Oku, Y., Yagi, K. (2008): Characterization of emY162 encoding an immunogenic protein cloned from an adult worm-specific cDNA library of Echinococcus multilocularis. Biochim. Biophys. Acta., 1780 (1): 1 – 6. DOI: 10.1016/j.bbagen.2007.08.02010.1016/j.bbagen.2007.08.020
- Kolaskar, A.S., Tongaonkar, P.C. (1990): A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett., 276(1 – 2): 172 – 174. DOI: 10.1016/0014-5793(90)80535-Q10.1016/0014-5793(90)80535-Q
- Kouguchi, H., Matsumoto, J., Yamano, K., Katoh, Y., Oku, Y., Suzuki, T., Yagi, K. (2011): Echinococcus multilocularis: purification and characterization of glycoprotein antigens with serodiagnostic potential for canine infection. Exp. Parasitol., 128 (1): 50 – 56. DOI: 10.1016/j.exppara.2011.02.00210.1016/j.exppara.2011.02.002
- Kyte, J., Doolittle, R.F. (1982): A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157(1): 105 – 132. DOI: 10.1016/0022-2836(82)90515-010.1016/0022-2836(82)90515-0
- Larsen, M.V., Lundegaard, C., Lamberth, K., Buus, S., Lund, O., Nielsen, M. (2007): Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics, 8: 424. DOI: 10.1186/1471-2105-8-42410.1186/1471-2105-8-424
- Li, Y., Liu, X., Zhu, Y., Zhou, X., Cao, C., Hu, X., Ma, H., Wen, H., Ma, X., Dind, J. B. (2013): Bioinformatic prediction of epitopes in the Emy162 antigen of Echinococcus multilocularis. Exp. Ther. Med., 6(2): 335 – 340. DOI: 10.3892/etm.2013.114210.3892/etm.2013.1142
- Lightowlers, M. W., Lawrence, S. B., Gauci, C. G., Young, J., Ralston, M.J., Maas, D., Heath, D.D. (1996): Vaccination against hydatidosis using a defined recombinant antigen. Parasite Immunol., 18 (9): 457 – 462. DOI: 10.1111/j.1365-3024.1996.tb01029.x10.1111/j.1365-3024.1996.tb01029.x
- Maenaka, K., Jones, E.Y. (1999): MHC superfamily structure and the immune system. Curr. Opin. Struct. Biol., 9(6): 745–753. DOI: 10.1016/S0959-440X(99)00039-110.1016/S0959-440X(99)00039-1
- Moghadam, Z.K., Ghaffarifar, F., Khalilpour, A., Abdul-Aziz, F., Saadatnia, G., Noordin, R. (2013): IgG4 detection of Echinococcus granulosus paramyosin is a useful diagnostic test for human hydatidosis. Clin. Vaccine Immunol., 20(4): 501 – 505. DOI: 10.1128/CVI.00019-1310.1128/CVI.00019-13362340023365208
- Monteiro, K.M., De-Carvalho, M.O., Zaha, A., Ferreira, H.B. (2010): Proteomic analysis of the Echinococcus granulosus metacestode during infection of its intermediate host. Proteomics, 10(10): 1985 – 1999. DOI: 10.1002/pmic.20090050610.1002/pmic.20090050620217864
- Mühlschlegel, F., Sygulla, L., Frosch, P., Massetti, P., Frosch, M. (1993): Paramyos in of Echinococcus granulosus: cDNA sequence and characterization of a tegumental antigen. Parasitol. Res., 79(8): 660 – 666. DOI: 10.1007/BF0093250810.1007/BF009325088295903
- Nanduri, J., Kazura, J.W. (1989): Paramyosin-enhanced clearance of Brugia malayi microfilaremia in mice. J. Immunol., 143(10): 3359 – 336310.4049/jimmunol.143.10.3359
- Nasrieh, M.A., Abdel-Hafez, S.K., Kamhawi, S.A., Craig, P.S., Schantz, P.M. (2003): Cystic echinococcosis in Jordan: socioeconomic evaluation and risk factors. Parasitol. Res., 90 (6): 456 – 466. DOI: 10.1007/s00436-003-0883-910.1007/s00436-003-0883-912774228
- Nunnari, G., Pinzone, M. R., Gruttadauria, S., Celesia, B. M., Madeddu, G., Malaguarnera, G., Pavone, P., Cappellani, A., Cacopardo, B. (2012): Hepatic echinococcosis: clinical and therapeutic aspects. World J. Gastroenterol., 18(13): 1448 – 1458. DOI: 10.3748/wjg.v18.i13.144810.3748/wjg.v18.i13.1448
- Oyarzún, P., Kobe, B. (2016): Recombinant and epitope-based vaccines on the road to the market and implications for vaccine design and production. Hum. Vaccin. Immunother., 12(3): 763 – 767. DOI: 10.1080/21645515.2015.109459510.1080/21645515.2015.1094595
- Petavy, A.F., Hormaeche, C., Lahmar, S., Ouhelli, H., Chabalgoity, A., Marchal, T., Azzouz, S., Schreiber, F., Alvite, G., Sarciron, M. E., Maskell, D., Esteves, A., Bosquet, G. (2008): An Oral Recombinant Vaccine in Dogs against Echinococcus granulosus, the Causative Agent of Human Hydatid Disease: A Pilot Study. PLoS Negl. Trop. Dis., 2(1): e125. DOI: 10.1371/journal.pntd.000012510.1371/journal.pntd.0000125
- Pfaff, E., Thiel, H.J., Beck, E., Strohmaier, K., Schaller, H. (1988): Analysis of neutralizing epitopes on foot-and-mouth disease virus. J. Virol., 62(6): 2033 – 204010.1128/jvi.62.6.2033-2040.1988
- Ponomarenko, J., Bui, H.H., Li, W., Fusseder, N., Bourne, P.E., Sette, A., Peters, B. (2008): ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC bioinformatics, 9: 514. DOI: 10.1186/1471-2105-9-51410.1186/1471-2105-9-514
- Ren, J., Liu, Q., Ellis, J., Li, J. (2014): Tertiary structure-based prediction of conformational B-cell epitopes through B factors. Bioinformatics, 30(12): i264 – 273. DOI: 10.1093/bioinformatics/btu28110.1093/bioinformatics/btu281
- Siles-Lucas, M., Merli, M., Mackenstedt, U., Gottstein, B. (2003): The Echinococcus multilocularis 14-3-3 protein protects mice against primary but not secondary alveolar echinococcosis. Vaccine, 21 (5 – 6): 431 – 439. DOI: 10.1016/S0264-410X(02)00517-010.1016/S0264-410X(02)00517-0
- Stern, L.J., Wiley, D.C. (1994): Antigenic peptide binding by class I and class II histocompatibility proteins. Structure, 2(4): 245 – 251. DOI: 10.1016/S0969-2126(00)00026-510.1016/S0969-2126(00)00026-5
- Testa, J.S., Shetty, V., Hafner, J., Nickens, Z., Kamal, S., Sinnathamby, G., Philip, R. (2012): MHC class I-presented T cell epitopes identified by immunoproteomics analysis are targets for a cross reactive influenza-specific T cell response. PLoS One, 7(11): e48484. DOI: 10.1371/journal.pone.004848410.1371/journal.pone.0048484349246123144892
- Toussaint, N.C., Kohlbacher, O. (2009): Towards in silico design of epitope-based vaccines. Expert Opin. Drug Discov., 4(10): 1047 – 1060. DOI: 10.1517/1746044090324228310.1517/1746044090324228323480396
- Vazquez-Talavera, J., Solis C.F., Terras L.I., Laclette J.P. (2001): Characterization and protective potential of the immune response to Taenia solium paramyosin in a murine model of cysticercosis. Infect. Immun., 69(9): 5412 – 5416. DOI: 10.1128/IAI.69.9.5412-5416.200110.1128/IAI.69.9.5412-5416.2001
- Vihinen, M., Torkkila, E., Riikonen, P. (1994): Accuracy of protein flexibility predictions. Proteins, 19(2): 141–149. DOI: 10.1002/prot.34019020710.1002/prot.340190207
- Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, L., Salimi, N., Damle, R., Sette, A., Peters, B. (2010): The Immune Epitope Database 2.0. Nucleic Acids Research, 38: D854 – 862. DOI: 10.1093/nar/gkp100410.1093/nar/gkp1004
- Yan, C., Wang, R., Li, J., Deng, Y., Wu, D., Zhang, H., Wang, L., Zhang, C., Sun, H., Zhang, X., Wang, J., Yang, H., Li, S. (2003): HLA-A gene polymorphism defined by high-resolution sequence-based typing in 161 Northern Chinese Han people. Gen. Prot. Bioinform., 1: 304 – 309. DOI: 10.1016/S1672-0229(03)01036-210.1016/S1672-0229(03)01036-2
- Yang, S., Wu, W., Tian, T., Zhao, J., Chen, K., Wang, Q., Feng, Z. (2015): Prevalence of Cystic Echinococcosis in Slaughtered Sheep as an Indicator to Assess Control Progress in Emin County, Xinjiang, China. Korean J. Parasitol., 53(3): 355 – 359. DOI: 10.3347/kjp.2015.53.3.35510.3347/kjp.2015.53.3.355451068126174832
- Zieglmayer, P., Focke-Tejkl, M., Schmutz, R., Lemell, P., Zieglmayer, R., Weber, M., Kiss, R., Blatt, K., Valent, P., Stolz, F., Huber, H., Neubauer, A., Knoll, A., Horak, F., Henning, R., Valenta, R. (2016): Mechanisms, safety and efficacy of a B cell epitope-based vaccine for immunotherapy of grass pollen allergy. EBioMedicine, 11: 43 – 57. DOI: 10.1016/j.ebiom.2016.08.02210.1016/j.ebiom.2016.08.022504999927650868
Language: English
Page range: 275 - 283
Submitted on: Nov 30, 2016
Accepted on: Jun 29, 2017
Published on: Nov 1, 2017
Published by: Slovak Academy of Sciences, Mathematical Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year
Keywords:
Related subjects:
© 2017 Y.-J. Lu, D.-Sh. Chen, W.-T. Hao, H.-W. Xu, Y.-W. Zhang, F.-F. Sun, W. Pan, published by Slovak Academy of Sciences, Mathematical Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.