Have a personal or library account? Click to login
Application of selected molecular markers in studies on forest trees Cover

Application of selected molecular markers in studies on forest trees

Open Access
|Jul 2017

References

  1. Avise J.C. 1994. Molecular Markers, Natural History, and Evolution. Chapman & Hall, New York. 10.1007/978-1-4615-2381-9
  2. Berg J.J., Coop G. 2014. A population genetic signal of polygenic adaptation. PLoS Genetics, 10 (8), e1004412.
  3. Chagne D., Lalanne C., Madur D., Kumar S., Frigérioa J.-M., Kriera C., Decroocqa S., Savouréc A., Bou-Dagher-Kharratc M., Bertocchia E., Bracha J., Plomion C. 2002. A high density linkage map of Pinus pinaster based on AFLPs. Annals of Forest Science, 59, 627-636.
  4. Chagné D., Chaumeil P., Ramboer A., Collada C., Guevara A., Cervera M.T., Vendramin G.G., Garcia V., Frigerio J.-M., Echt C., Richardson T., Plomion C. 2004. Cross-species transferability and mapping of genomic and cDNA SSRs in pines. Theoretical and Applied Genetics, 109 (6), 1204-1214.
  5. Chancerel E., Lamy J.B., Lesur I., Noirot C., Klopp C., Ehrenmann F., Boury C., Le Provost G., Label P., Lalanne C., Léger V., Salin F., Gion J.-M., Plomion C. 2013. High density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination. BMC Biology, 11, 50.10.1186/1741-7007-11-50366019323597128
  6. Cullingham C.I., Cooke J.E.K., Dang S., Coltman D.W. 2013. A species-diagnostic SNP panel for discriminating lodgepole pine, jack pine, and their interspecific hybrids. Tree Genetics and Genomes, 9 (4), 1119-1127.
  7. Eckert A.J., Pande B., Ersoz E.S., Wright M.H., Rashbrook V.K., Nicolet C.M, Neale D.B. 2009. Highthroughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genetics and Genomes, 5, 225-234.
  8. Edwards K.J., Mogg R. 2001. Plant genotyping by analysis of single nucleotide polymorphisms. Plant Genotyping: The DNA Fingerprinting of Plants. Henry RJ. Wallingford, CABI, 1-13.
  9. Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nature Reviews Genetics, 5, 435-445. DOI: 10.1038/nrg1348.10.1038/nrg134815153996
  10. Elsik C.G., Williams C.G. 2000. Retroelements contribute to the excess low-copy-number DNA in pine. Molecular and General Genetics, 264 (1/2), 47-55.
  11. Feder M.E., Mitchell-Olds T. 2003. Evolutionary and ecological functional genomics. Nature Reviews Genetics, 4, 651-657.
  12. Giertych M. 1979. Summary of results on Scots pine (Pinus sylvestris L.) height growth in IUFRO provenance experiment. Silvae Genetica, 28 (4), 136-152.
  13. González-Martínez S.C., Wheeler N.C., Ersoz E., Nelson C.D., Neale D.B. 2007. Association Genetics in Pinus taeda L. I. Wood Property Traits. Genetics, 175 (1), 399-409.
  14. Guan L., Suharyanto, Shiraishi S. 2011. Isolation and characterization of tetranucleotide microsatellite loci in Pinus massoniana (Pinaceae). American Journal of Botany, 98, e216-e217. DOI: 10.3732/ajb.1100076.10.3732/ajb.110007621795729
  15. Hansen O.K., Kjaer E.D. 2006. Paternity analysis with microsatellites in a Danish Abies nordmanniana clonal seed orchard reveals dysfunctions. Canadian Journal of Forest Research, 36, 1054-1058.
  16. Jaworski A. 2011. Hodowla lasu. Charakterystyka hodowlana drzew i krzewów leśnych. PWRiL, Warszawa.
  17. Liu J.-J., Sniezko R.A., Sturrock R.N., Chen H. 2014. Western white pine SNP discovery and highthroughput genotyping for breeding and conservation applications. BMC Plant Biology, 14, 1586.
  18. Moriguchi Y., Yamazaki Y., Taira H., Tsumura Y. 2010. Mating patterns in an indoor miniature Cryptomeria japonica seed orchard as revealed by microsatellite markers. New Forest, 39, 261-273. DOI: 10.1007/s11056-009-9169-0.10.1007/s11056-009-9169-0
  19. Munyard K.A., Ledger J.M., Lee C.Y., Babra C., Groth D.M. 2009. Characterization and multiplex genotyping of alpaca tetranucleotide microsatellite markers. Small Ruminant Research, 85 (2/3), 153-156. DOI: 10.1016/j.smallrumres.2009.07.012.10.1016/j.smallrumres.2009.07.012
  20. Murray B.G. 1998. Nuclear DNA Amounts in Gymnosperms. Annals of Botany, 82 (Supplement A), 3-15.
  21. Nystedt B., Street N.R., Wetterbom A., Zuccolo A., Lin Y.-C., Scofield D.G., Vezzi F., Delhomme N., Giacomello S., Alexeyenko A., Vicedomini R., Sahlin K., Sherwood E., Elfstrand M., Gramzow L., Holmberg K., Hällman J., Keech O., Klasson L., Koriabine M., Kucukoglu M., Käller M., Luthman J., Lysholm F., Niittylä T., Olson Å., Rilakovic N., Ritland C., Rosselló J.A., Sena J., Svensson T., Talavera-López C., Theissen G., Tuominen H., Vanneste K., Wu Z.-Q., Zhang B., Zerbe P., Arvestad L., Bhalerao R., Bohlmann J., Bousquet J., Garcia Gil R., Hvidsten T.R., de Jong P., MacKay J., Morgante M., Ritland K., Sundberg B., Lee Thompson S., Van de Peer Y., Andersson B., Nilsson O., Ingvarsson P.K., Lundeberg J. Jansson S. 2013. The Norway spruce genome sequence and conifer genome evolution. Nature, 497, 579-584.
  22. Pavy N., Pelgas B., Beauseigle S., Blais S., Gagnon F., Gosselin I., Lamothe M., Isabel N., Bousquet J. 2008. Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics, 9, 21.10.1186/1471-2164-9-21224611318205909
  23. Plomion C., Bartholomé J., Lesur I., Boury C., Rodríguez-Quilón I., Lagraulet H., Ehrenmann F., Bouffier L., Gion J.M., Grivet D., de Miguel M., de María N., Cervera M.T., Bagnoli F., Isik F., Vendramin G.G., González-Martínez S.C. 2016. Highdensity SNP assay development for genetic analysis in maritime pine (Pinus pinaster). Molecular Ecology Resources, 16 (2), 574-587.
  24. Rafalski A. 2002. Applications of single nucleotide polymorphisms in crop genetics. Current Opinion in Plant Biology, 5 (2), 94-100.
  25. Ryynänen H.J., Tonteri A., Vasemägi A., Primmer C.R. 2007. A comparison of biallelic markers and microsatellites for the estimation of population and conservation genetic parameters in Atlantic salmon (Salmo salar). Journal of Heredity, 98 (7), 692-704.10.1093/jhered/esm09317986472
  26. Slavov G.T., Howe G.T., Adams W.T. 2005. Pollen contamination and mating patterns in a Douglas- fir seed orchard as measured by simple sequence repeat markers. Canadian Journal of Forest Research, 35, 1592-1603. DOI: 10.1139/x05-082.10.1139/x05-082
  27. Suharyanto, Nose M., Shiraishi S. 2012. Development and application of a multiplex SNP system to evaluate the mating dynamics of Pinus thunbergii clonal seed orchards. Molecular Breeding, 30, 1465. DOI: 10.1007/s11032-012-9733-8.10.1007/s11032-012-9733-8
  28. Wachowiak W., Salmela M.J., Ennos R.A., Iason G., Cavers S. 2011. High genetic diversity at the extreme range edge: nucleotide variation at nuclear loci in Scots pine (Pinus sylvestris L.) in Scotland. Heredity, 106 (5), 775-87. DOI: 10.1038/hdy.2010.118.10.1038/hdy.2010.118318624120823905
  29. Wachowiak W. 2015. Genetic relationships between Polish and reference populations of Scots pine (Pinus sylvestris L.) in Europe based on nucleotide polymorphism study at nuclear loci. Sylwan, 159 (1), 53-61.
  30. Weller J.I., Seroussi E., Ron M. 2006. Estimation of the number of genetic markers required for individual animal identification accounting for genotyping errors. Animal Genetics, 37, 387-389. DOI: 10.1111/j.1365-2052.2006.01455.x.10.1111/j.1365-2052.2006.01455.x16879353
  31. Werner F.A., Durstewitz G., Habermann F.A., Thaller G., Kramer W., Kollers S., Buitkamp J., Georges M., Brem G., Mosner J., Fries R. 2004. Detection and characterization of SNPs useful for ID control and parentage testing in major European dairy breeds. Animal Genetics, 35, 44-49. DOI: 10.1046/j.1365-2052.2003.01071.x.10.1046/j.1365-2052.2003.01071.x14731229
  32. Williams C., Williamson R., Coutelle C., Loeffler F., Smith J., Ivinson A. 1988. Same-day, first-trimester antenatal diagnosis for cystic fibrosis by gene amplification. Lancet, 2 (8602), 102-103.
  33. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18 (22), 6531-6535. DOI: 10.1093/nar/18.22.6531.10.1093/nar/18.22.65313326061979162
  34. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Friters A., Pot J., Paleman J., Kuiper M., Zabeau M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23 (21), 4407-4414. DOI: 10.1093/nar/23.21.440710.1093/nar/23.21.44073073977501463
DOI: https://doi.org/10.1515/ffp-2017-0014 | Journal eISSN: 2199-5907 | Journal ISSN: 0071-6677
Language: English
Page range: 146 - 151
Submitted on: Dec 5, 2016
Accepted on: Feb 9, 2017
Published on: Jul 18, 2017
Published by: Forest Research Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2017 Anna Tereba, Agata Konecka, Justyna A. Nowakowska, published by Forest Research Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.