Have a personal or library account? Click to login
Application of CAPS markers for diversity assessment in grass pea (Lathyrus sativus L.) Cover

Application of CAPS markers for diversity assessment in grass pea (Lathyrus sativus L.)

Open Access
|Sep 2019

References

  1. Akashi Y., Shiomi S., Kubo Y., Masuda M. & Kato K. 2001. Microsatellite and CAPS markers for ethylene-related genes, (1-Aminocyclopropane-1-caroxylic Acid ACC) synthase and ACC oxidase genes, and their variation in Melon (Cucumis melo L.). Breeding Sciences 51: 107-112.10.1270/jsbbs.51.107
  2. Barth S., Melchinger A. E. & Bberstedt T. L. 2002. Genetic diversity in Arabidopsis thaliana (L.) Heynh. investigated by cleaved amplified polymorphic sequence (CAPS) and Inter-Simple Sequence Repeat (ISSR) markers. Mol Ecol 11: 495-505.10.1046/j.0962-1083.2002.01466.x11918784
  3. Belaid Y., Chtourou-Ghorbel N., Marrakchi M. & Trifi-Farah N. 2006. Genetic diversity within and between populations of Lathyrus genus (Fabaceae) revealed by ISSR markers. Genet Resour Crop Ev 53: 1413-1418.10.1007/s10722-005-5680-0
  4. Campbell C.G. 1997. Grass pea. Lathyrus sativus L. Promoting the conservation and use of underutilized and neglected crops. 18. Institute of Plant Genetics and Crop Plant Research, Gatersleben/International Plant Genetic Resources Institute, Rome, Italy.
  5. Chandel K. P. S. & Joshi B. S. 1983. Multivariate analysis in green-seeded pea. Indian J Agr Sci 53: 198-200.
  6. Chowdhury M. A. & Slinkard A. E. 2000. Genetic diversity in grass pea (Lathyrus sativus L.). Genet Resour Crop Ev 47: 163-169.10.1023/A:1008760604990
  7. Chtourou-Ghorbel N., Lauga B., Combes D. & Marrakchi M. 2001. Comparative genetic diversity studies in the genus Lathyrus using RFLP and RAPD markers. Lathyrus Lathyrism Newsletter 2: 62-68.
  8. Croft A. M., Pang E. C. K. & Taylor P. W. J. 1999. Molecular analysis of Lathyrus sativus L. (grass pea) and related Lathyrus species. Euphytica 107: 167-176.10.1023/A:1003520721375
  9. CSA 2016. Agricultural sample survey 2015/2016. Report on area and production of crops volume I. Central Statistics Authority (CSA), Addis Ababa, Ethiopia.
  10. Gutierrez N., Avila C. M., Duc G., Marget P., Suso M. J., Moreno M. T. & Torres A. M. 2006. CAPs markers to assist selection for low vicine and convicine contents in faba bean (Vicia faba L.). Theor Appl Genet 114: 59-66.10.1007/s00122-006-0410-317013617
  11. Holsinger K. E. & Lewis P. O. 2006. HICKORY: A package for analysis of Population Genetic data v1.0.4. Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, USA.
  12. Hu C., Tsai Y. & Lin 2014. Development of STS and CAPS markers for variety identification and genetic diversity analysis of tea germplasm in Taiwan. Bot Stud 55:12.10.1186/1999-3110-55-12543031228510923
  13. Konieczny A. & Ausubel F. M. 1993. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4: 403-410.10.1046/j.1365-313X.1993.04020403.x
  14. Konovalov R., Toshchakova E. & Gostimsky S. 2005. A CAPS marker set for mapping in linkage group III of pea Pisum sativum L.). Cell Mol Biol Lett 10(1): 163-71.
  15. Lioi L. & Galasso I. 2013. Development of genomic simple sequence repeat markers from an enriched genomic library of grass pea (Lathyrus sativus L.). Plant breeding. Doi:10.1111/pbr.1209310.1111/pbr.12093
  16. Miller M. P. 1997. Tools for population genetic analysis (TFPGA): A windows program for the analysis of allozyme and molecular population genetic data. Freely available from: http://bioweb.usu.edu/mpmbio/index.htm
  17. Nei M. 1972. Genetic distance between populations. Am Nat 106: 283-292.10.1086/282771
  18. Peakall R. & Smouse P. E. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28: 2537-2539. Freely available from: http://bioinformatics.oxfordjournals.org/content/28/19/2537.10.1093/bioinformatics/bts460346324522820204
  19. Shiferaw E., Pè E., Porceddu M. E. & Ponnaiah M. 2012. Exploring the genetic diversity of Ethiopian grass pea (Lathyrus sativus L.) using EST-SSR markers. Mol. Breeding 30: 789-797.10.1007/s11032-011-9662-y341002022924019
  20. Skiba B., Ford R. & Pang E. C. K. 2003. Amplification and detection of polymorphic Sequence-Tagged Sites in Lathyrus sativus. Plant Mol Biol Rep 21: 391-404.10.1007/BF02772588
  21. Smartt J., Kaul A., Araya W. A., Rahman M. M. & Kearney J. 1994. Grass pea (Lathyrus sativus L.) as a potentially safe food legume crop. In: F. J. Muehlbauer & W. J. Kaiser (eds.). Expanding the production and use of cool season food legumes, pp. 144-155. Kluwer Academic Publishers, Dordrecht, The Netherlands.10.1007/978-94-011-0798-3_7
  22. Sun X., Yang T., Guan J., Ma Y., Jiang J., Cao R., Burlyaeva M., Vishnyakova M., Semenova E., Bulyntsev S. & Zong X. 2012. Development of 161 novel EST-SSR markers from Lathyrus sativus (Fabaceae). Am J Bot 99: 379-390.10.3732/ajb.110034623028003
  23. Tadesse W. & Bekele E. 2003. Phenotypic diversity of Ethiopian grass pea (Lathyrus sativus L.) in relation to geographical regions and altitudinal range. Genet Res Crop Ev 50: 497-505.10.1023/A:1023923813312
  24. Tavoletti S. & Iommarini L. 2007. Molecular marker analysis of genetic variation characterizing a grass pea (Lathyrus sativus) collection from central Italy. Plant Breeding 1266: 607-611.10.1111/j.1439-0523.2007.01407.x
  25. Tsumura Y. & Tomaru N. 1999. Genetic diversity of Cryptomeria japonica using co-dominant DNA markers based on sequenced tagged site. Theor Appl Genet 98: 396-404.10.1007/s001220051085
  26. Tsumura Y., Matsumoto A., Tani N., Ujino-Ihara T., Kado T., Iwata H. & Uchida K. 2007. Genetic diversity and the genetic structure of natural populations of Chamaecyparis obtusa: implications for management and conservation. Heredity 99: 161-172.10.1038/sj.hdy.680097817473864
  27. Varshney R.K., Chabane K., Hendre P. S., Aggarwal R. K. & Graner A. 2007. Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Sci 173: 638-649.10.1016/j.plantsci.2007.08.010
  28. Vaz Patto M. C., Skiba B., Pang E. C. K., Ochatt S. J., Lambein F. & Rubiales D. 2006. Lathyrus improvement for resistance against biotic and abiotic stresses: From classical breeding to marker assisted selection. Euphytica 147: 133-147.10.1007/s10681-006-3607-2
  29. Wang F., Yang T., Burlyaeva M., Li L., Jiang J., Fang L., Redden R. & Zong X. 2015. Genetic diversity of grass pea and its relative species revealed by SSR markers. PLoS ONE 10(3): e0118542. Doi:10.1371/journal.pone.0118542.10.1371/journal.pone.0118542436864725793712
  30. Yang T., Jiang J., Burlyaeva M., Hu J., Coyne C. J., Kumar S., Redden R., Sun X., Wang F., Chang J., Hao X., Guan J. & Zong X. 2014. Large-scale microsatellite development in grass pea (Lathyrus sativus L.), an orphan legume of the arid areas. BMC Plant Biol 14: 65.10.1186/1471-2229-14-65
DOI: https://doi.org/10.1515/biorc-2017-0012 | Journal eISSN: 2080-945X | Journal ISSN: 1897-2810
Language: English
Page range: 11 - 18
Submitted on: Sep 21, 2017
Accepted on: Dec 18, 2017
Published on: Sep 9, 2019
Published by: Adam Mickiewicz University
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year
Related subjects:

© 2019 Eleni Shiferaw, Enrico Porceddu, Enrico Pé, Maharajah Ponnaiah, published by Adam Mickiewicz University
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.