Have a personal or library account? Click to login
Example of the application the microsatellite DNA fragments in the study of farmed European catfish (Silurus glanis, L.) broodstock Cover

Example of the application the microsatellite DNA fragments in the study of farmed European catfish (Silurus glanis, L.) broodstock

Fisheries & Aquatic Life
Volume 23 (2015): Issue 2 (June 2015)
By: Marcin Kuciñski,  Tomasz Liszewski,  Anna Krzyoeków,  Dorota Fopp-Bayat and  Beata Łączyñska  
Open Access
|Jul 2015

References

  1. Alp A., Kara C., Uckardeo F., Carol J., Garcia-Berthou E. 2011 - Age and growth of the European catfish (Silurus glanis) in a Turkish Reservoir and comparison with introduced populations - Rev. Fish Biol. Fish. 21: 283-294.10.1007/s11160-010-9168-4
    Search in Google Scholar
  2. Bolliet V., Aranda A., Boujard T. 2001 - Demand-feeding rhythm in rainbow trout and European catfish. Synchronisation by photoperiod and food availability - Phys. Behavior 73: 625-633.10.1016/S0031-9384(01)00505-4
    Search in Google Scholar
  3. Brzuska E., Adamek J. 1999 - Artificial spawning of European catfish, Silurus glanis L.: stimulation of ovulation using LHRH-a, Ovaprim and carp pituitary extract - Aquacult. Res. 30: 59-64.
    Search in Google Scholar
  4. Ditlecadet D., Dufresne F., Le Francois N.R., Blier P.U. 2006 - Applying microsatellites in two commercial strains of Arctic charr (Salvelinus aplinus): Potential for a selective breeding program - Aquaculture 257: 37-43.10.1016/j.aquaculture.2006.03.016
    Search in Google Scholar
  5. Do C., Waples R.S., Peel D., Macbeth G.M., Tillet B.J., Ovenden J.R. 2013 - NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data - Mol. Ecol. Res. 14: 209-214.10.1111/1755-0998.1215723992227
    Search in Google Scholar
  6. Draszkiewicz-Mioduszewska H., Wo3os A., Mickiewicz M. 2014 - State of Polish fisheries in flowing inland waters in 2012. Part 1. Authorized to fisheries, fishery districts, economic catches and employment - Komun. Ryb. 1: 27-33 (in Polish).
    Search in Google Scholar
  7. Duchesne P., Bernatchez L. 2002 - An analytical investigation of the dynamics of inbreeding in multi-generation supportive breeding - Conserv. Genet. 3: 45-58.10.1023/A:1014255005544
    Search in Google Scholar
  8. Excoffier L., Lischer L. 2010 - Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows - Mol. Ecol. Resour. 10: 564-567.10.1111/j.1755-0998.2010.02847.x21565059
    Search in Google Scholar
  9. FAO 2015 - Food and Agriculture Organization of the United Nations - http://www.fao.org/home/en/. Accessed 07 February 2015.
    Search in Google Scholar
  10. Filipiak J., Sadowski J., Trzebiatowski R. 1997 - Comparative analysis of results of using different food rations in juvenile wels (Siluris glanis) culture - Acta Ichthyol. Piscat. 27: 41-51.10.3750/AIP1997.27.1.03
    Search in Google Scholar
  11. Florczyk K., Mazurkiewicz J., Przybylska K., Ulikowski D., Szczepkowski M., Andrzejewski W., Golski J. 2014 - Growth performance, feed intake and morphology of juvenile European catfish, Silurus glanis (L.) fed diets containing different protein and lipid levels - Aqacult. Int. 22: 205-214.
    Search in Google Scholar
  12. Fopp-Bayat D. 2010 - Microsatellite DNA variation in the Siberian sturgeon, Acipenser baeri (Actinoptterygii, Acipenseriformes, Acipenseridae), cultured in a Polish fish farm - Acta Ichthyol. Piscat. 40: 21-25.
    Search in Google Scholar
  13. Fopp-Bayat D., Jankun M., KuŸminski H. 2010 - Genetic characterization of Polish cultured brook trout, Salvelinus fontinalis (Mitchill), based on microsatellite DNA analysis - Arch. Pol. Fish. 18: 93-99.
    Search in Google Scholar
  14. Fopp-Bayat D., Ciereszko A. 2012 - Microsatellite genotyping of cryopreserved spermatozoa for the improvement of whitefish semen cryobanking - Cryobiology 65: 196-201.10.1016/j.cryobiol.2012.06.00322750203
    Search in Google Scholar
  15. Frankham R., Ballou J.D., David A., Briscoe D.A. 2010 - Introduction to Conservation Genetics; 2nd Edition - Cambridge University Press, Cambridge.10.1017/CBO9780511809002
    Search in Google Scholar
  16. Garza J.C., Williamson E.G. 2001 - Detection of reduction in population size using data from microsatellite loci - Mol. Ecol. 10: 305-318.10.1046/j.1365-294x.2001.01190.x11298947
    Search in Google Scholar
  17. Glover K.A., Taggart J.B., Skaala O., Teale A.J. 2001 - Comparative performance of juvenile sea trout families in high and low feeding environments - J. Fish Biol. 59: 105-115.10.1111/j.1095-8649.2001.tb02341.x
    Search in Google Scholar
  18. Goudet J. 2002 - Fstat, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Updated from Goudet 1995 - Available from http://www2.unil.ch/popgen/softwares/fstat.htm Accessed 07 February 2015.
    Search in Google Scholar
  19. Hellerman E.M., Grobler P.J., Jones J.W. 2007 - Application of DNA markers for population genetic analysis - In: Aquaculture genome technologies (Ed.) Z. Liu, Blackwell Publishing: 109-136.
    Search in Google Scholar
  20. Hill W.G., Robertson A. 1968 - Linkage disequilibrium in finite populations - Theor. Appl. Gen. 38: 266-231.10.1007/BF0124562224442307
    Search in Google Scholar
  21. Hoarou G., Boon E., Jongma D.N., Ferber S., Palsson J., van der Veer H.W., Rijnsdorp A.D., Stam W.T., Olsen J.L. 2005 - Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.) - Proc. R. Soc.-B Biol. Sci. 272: 497-503.
    Search in Google Scholar
  22. Huff D.D., Miller L.M., Chizinski C.J., Vondracek B. 2011 - Mixed-source reintroductions lead to outbreeding depression in second generation descendants of a native North American fish - Mol. Ecol. 20: 4246-4258.10.1111/j.1365-294X.2011.05271.x21917046
    Search in Google Scholar
  23. Jankowska B., Zakeoe Z., ￣mijewski T., Ulikowski D., Kowalska A. 2004 - Impact of diet on the fatty acids profile of European catfish (Silurus glanis L.) - Arch. Pol. Fish. 12: 99-110.
    Search in Google Scholar
  24. Kaczmarczyk D., ￣uchowska E. 2011 - Genetic diversity of two lake minnow, Eupallasella percnurus (Pall.), populations based on microsatellite DNA polymorphism - Arch. Pol. Fish. 19: 145-151.
    Search in Google Scholar
  25. Kaczmarczyk D., ￡uczynski M., Brzuzan P. 2012 - Genetic variation in three paddlefish (Polyodon spathula Walbaum) stocks based on microsatellite DNA analysis - Czech J. Anim. Sci. 57: 345-352.10.17221/6269-CJAS
    Search in Google Scholar
  26. Kaczmarczyk D., Fopp-Bayat D. 2013 - Assemblage of spawning pairs based on their individual genetic profiles - as tool for maintaining genetic variation within sturgeon populations - Aquac. Res. 44: 677-682.10.1111/j.1365-2109.2011.03064.x
    Search in Google Scholar
  27. Kim J.E., Withler R.E., Ritland C., Cheng K.M. 2004 - Genetic variation within and between domesticated Chinook salmon, Oncorhynchus tshawytscha, strains and their progenitor populations - Dev. Biol. Fish. 23: 371-378.
    Search in Google Scholar
  28. Kottelat M., Freyhof J. 2007 - Handbook of European freshwater fishes - Switzerland: Steven Simpson Books.
    Search in Google Scholar
  29. Krieg F., Estoup A., Trianstafylldis A., Guymard R. 1999 - Isolation of microsatellite loci in European catfish, Silurus glanis - Mol. Ecol. 8: 1964-1966.
    Search in Google Scholar
  30. Krieg F., Triantafyllidis A., Guyomard R. 2000 - Mitochondrial DNA variation in European populations of Silurus glanis - J. Fish Biol. 56: 713-724.10.1111/j.1095-8649.2000.tb00767.x
    Search in Google Scholar
  31. Kucinski M., Fopp-Bayat D., Liszewski T., Svinger V., Lebeda I., Kolman R. 2015 - Genetic analysis of four European huchen (Hucho hucho Linnaeus, 1758) broodstocks from Poland, Germany, Slovakia and Ukraine: implication for conservation - J. Appl. Gen. doi: 10.1007/s13353-015-0274-9.10.1007/s13353-015-0274-9461785725743021
    Search in Google Scholar
  32. Lampila S., Kvist L., Wistbacka R., Orell M. 2009 - Genetic diversity and population differentiation in the endangered Siberian flying squirrel (Pteromys volans) in a fragmented landscape - Europ. J. Wildlife Res. 55: 397-406.10.1007/s10344-009-0259-2
    Search in Google Scholar
  33. Legendre M., Linhart O., Billard R. 1996 - Spawning and management of gametes, fertilized eggs and embryos in Siluroidei - Aquat. Living Resour. 9: 59-80.
    Search in Google Scholar
  34. Li X., Tzika A.C., Liu Y., Doninck K.V., Zhu Q., Milinkovitch M.C. 2010 - Preliminary genetic status of the spotted seal Phoca largha in Liodong Bay (China) based on microsatellite and mitochondrial DNA analyses - Trends Evol. Biol. 2: 33-38.10.4081/eb.2010.e6
    Search in Google Scholar
  35. Linhart O., Štich L., Švarc J., Rodlina M., Audebert J.P., Grecu J., Billard R. 2002 - The culture of the European catfish, Silurus glanis, in the Czech Republic and in France - Aquat. Living Resour. 15: 139-144.
    Search in Google Scholar
  36. Lirski A., Myszkowski L. 2014 - State of Polish aquaculture in 2013 based on RRW-22 questionnaire analysis. Part one - Komun. Ryb. 6: 24-27 (in Polish).
    Search in Google Scholar
  37. Liu K., Muse S.V. 2005 - PowerMarker: Integrated analysis environment for genetic marker data - Bioinformatics 21: 2128-2129.10.1093/bioinformatics/bti28215705655
    Search in Google Scholar
  38. Luikart G., Cournet J.M. 1998 - Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data - Conserv. Biol. 12: 228-237.10.1046/j.1523-1739.1998.96388.x
    Search in Google Scholar
  39. Luikart G., Cournet J.M. 1999 - Estimating the effective number of breeders from heterozygote excess in progeny - Genetics 151: 1211-1216.10.1093/genetics/151.3.1211
    Search in Google Scholar
  40. Mickiewicz M., Draszkiewicz-Mioduszewska H., Wo3os A. 2014 - State of Polish fisheries in flowing inland waters in 2012. Part 2. Stocking - Komun. Ryb. 2: 24-28 (in Polish).
    Search in Google Scholar
  41. Olsson J., Florin A.B., Mo K., Aho T., Ryman N. 2012 - Genetic structure of whitefish (Coregonus maraena) in the Baltic Sea - Estuar. Coast. Shelf Sci. 97: 104-113.10.1016/j.ecss.2011.11.032
    Search in Google Scholar
  42. Piry S., Luikard G., Cornuet J.M. 1999 - Bottleneck: A computer program for detecting recent reductions in effective population size from allele frequency data - J. Hered. 4: 502-503.10.1093/jhered/90.4.502
    Search in Google Scholar
  43. Pohlman K., Atema J., Breithaupt T. 2004 - The importance of the lateral line in nocturnal predation of piscivorous catfish - J. Exp. Biol. 207: 2971-2978.10.1242/jeb.01129
    Search in Google Scholar
  44. Quan Y.C., Sun X.W., Liang L.Q. 2007 - Development of microsatellite markers for southern catfish (Silurus meriaionalis) and cross-species amplification in northern sheatfish (Silurus soldatovi) - Mol. Ecol. Notes 7: 223-226.10.1111/j.1471-8286.2006.01480.x
    Search in Google Scholar
  45. Rousset F. 2008 - GenePop’007: a complete re-implementation of the GenePop software for Windows and Linux - Mol. Ecol. Res. 8: 103-106.10.1111/j.1471-8286.2007.01931.x
    Search in Google Scholar
  46. Smitherman R.O., Dunham R.A., Whitehead P.K. 1996 - Selection, hybridization and genome manipulation in Siluroidei - Aquat. Living Resour. 9: 93-102.
    Search in Google Scholar
  47. Triantafyllidis A., Ozouf-Costaz C., Rab P., Suciu R., Karakousis Y. 1999a - Allozyme variation in European silurid catfishes, Silurus glanis and Silurus aristotelis - Biochem. Sys. Ecol. 27: 487-498.
    Search in Google Scholar
  48. Triantafyllidis A., Abatzopoulos T.J., Economidis P.S. 1999b - Genetic differentiation and phylogenetic relationships among Greek Silurus glanis and Silurus aristotelis (Pisces, Siluridae) populations, assessed by PCR-RFLP analysis of mitochondrial DNA segments - Heredity 82: 503-509.
    Search in Google Scholar
  49. Triantafyllidis A., Krieg F., Cottin C., Abatzopoulos T.J., Triantaphyllidis C., Guyomard R. 2002 - Genetic structure and phylogeography of European catfish (Silurus glanis) populations - Mol. Ecol. 11: 1039-1055.10.1046/j.1365-294X.2002.01501.x
    Search in Google Scholar
  50. Tringali M.D., Bert T.M. 1998 - Risk to genetic effective population size should be an important consideration in fish stock-enhancement programs - B. Mar. Sci. 62: 641-659.
    Search in Google Scholar
  51. Tzika A.C., Rosa S.F.P., Fabiani A., Snell H.L., Snell H.M., Marquez C., Tapia W., Rassmann K., Gentile G., Milinkovitch M.C. 2008 - Population genetics of Galapagos land iguana (genus Conolophus) remnant populations - Mol. Ecol. 17: 4943-4952.10.1111/j.1365-294X.2008.03967.x
    Search in Google Scholar
  52. Waples R.S. 1999 - Dispelling some myths about hatcheries - Fisheries 24: 12-21.10.1577/1548-8446(1999)024<;0012:DSMAH>2.0.CO;2
    Search in Google Scholar
  53. Wedekind C., Rudolfsen G., Jacob A., Urbach D., Muller R. 2007 - The genetic consequences of hatchery-induced competition in a salmonid - Biol. Conserv. 137: 180-188.10.1016/j.biocon.2007.01.025
    Search in Google Scholar
  54. Yeh F.C., Boylet J.B. 1997 - Population genetic analysis of codominant and dominant markers and quantitative traits - Belg. J. Bot. 129: 157.
    Search in Google Scholar
DOI: https://doi.org/10.1515/aopf-2015-0010 | Journal eISSN: 2545-059X | Journal ISSN: 2545-0255
Journal RSS Feed
Language: English
Page range: 91 - 99
Submitted on: Feb 24, 2015
|
Accepted on: May 15, 2015
|
Published on: Jul 29, 2015
Published by: Stanisław Sakowicz Inland Fisheries Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year
Keywords:
Silurus glanis,
microsatellite loci,
gene diversity,
broodstock
Related subjects:
Life sciences,
Zoology,
Life sciences, other

© 2015 Marcin Kuciñski, Tomasz Liszewski, Anna Krzyoeków, Dorota Fopp-Bayat, Beata Łączyñska, published by Stanisław Sakowicz Inland Fisheries Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Previous articleVolume 23 (2015): Issue 2 (June 2015)Next article