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Modules for Automated Validation and Comparison of Models of Neurophysiological and Neurocognitive Biomarkers of Psychiatric Disorders: ASSRUnit—A Case Study Cover

Modules for Automated Validation and Comparison of Models of Neurophysiological and Neurocognitive Biomarkers of Psychiatric Disorders: ASSRUnit—A Case Study

Open Access
|Jul 2018

References

  1. Adams, R. A. , Huys, Q. J. , & Roiser, J. P. (2016). Computational psychiatry: Towards a mathematically informed understanding of mental illness. Journal of Neurology, Neurosurgery & Psychiatry, 87(1), 5363.
  2. Başar, E. , Başar-Eroglu, C. , Karakaş, S. , & Schürmann, M. (2001). Gamma, alpha, delta, and theta oscillations govern cognitive processes. International Journal of Psychophysiology, 39(2–3), 241248.
  3. Basar, E. , & Guntekin, B. (2013). Review of delta, theta, alpha, beta, and gamma response oscillations in neuropsychiatric disorders. Supplements to Clinical Neurophysiology, 62, 303341.
  4. Beeman, D. (2013). A modeling study of cortical waves in primary auditory cortex. BMC Neuroscience, 14(Suppl. 1), P23.
  5. Börgers, C. , & Kopell, N. (2005). Effects of noisy drive on rhythms in networks of excitatory and inhibitory neurons. Neural Computation, 17(3), 557608.
  6. Bower, J. M. (1992). Modeling the nervous system. Trends in Neuroscience, 15(11), 411412.
  7. Bower, J. M. , & Beeman, D. (1993). The book of genesis: Exploring realistic neural models with the general neural simulation system. New York, NY: Springer.
  8. Brenner, C. A. , Sporns, O. , Lysaker, P. H. , & O’Donnell, B. F. (2003). EEG synchronization to modulated auditory tones in schizophrenia, schizoaffective disorder, and schizotypal personality disorder. American Journal of Psychiatry, 160(12), 22382240.
  9. Brockhaus-Dumke, A. , Mueller, R. , Faigle, U. , & Klosterkoetter, J. (2008). Sensory gating revisited: Relation between brain oscillations and auditory evoked potentials in schizophrenia. Schizophrenia Research, 99(1), 238249.
  10. Cannon, R. C. , Gleeson, P. , Crook, S. , Ganapathy, G. , Marin, B. , Piasini, E. , & Silver, R. A. (2014). LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. Frontiers in Neuroinformatics, 8, Article 79.
  11. Cano-Colino, M. , & Compte, A. (2012). A computational model for spatial working memory deficits in schizophrenia. Pharmacopsychiatry, 45(S 01), S49S56.
  12. Cho, R. , Konecky, R. , & Carter, C. (2006). Impairments in frontal cortical γ synchrony and cognitive control in schizophrenia. Proceedings of the National Academy of Sciences of the United States of America, 103(52), 1987819883.
  13. Compte, A. , Brunel, N. , Goldman-Rakic, P. S. , & Wang, X.-J. (2000). Synaptic mechanisms and network dynamics underlying spatial working memory in a cortical network model. Cerebral Cortex, 10(9), 910923.
  14. Corlett, P. R. , & Fletcher, P. C. (2014). Computational psychiatry: A rosetta stone linking the brain to mental illness. The Lancet Psychiatry, 1(5), 399402.
  15. Durstewitz, D. , Seamans, J. K. , & Sejnowski, T. J. (2000). Dopamine-mediated stabilization of delay-period activity in a network model of prefrontal cortex. Journal of Neurophysiology, 83(3), 17331750.
  16. Engel, A. K. , Kreiter, A. K. , König, P. , & Singer, W. (1991). Synchronization of oscillatory neuronal responses between striate and extrastriate visual cortical areas of the cat. Proceedings of the National Academy of Sciences of The United States of America, 88(14), 60486052.
  17. Ford, J. M. , Roach, B. J. , Hoffman, R. S. , & Mathalon, D. H. (2008). The dependence of p300 amplitude on gamma synchrony breaks down in schizophrenia. Brain Research, 1235, 133142.
  18. Friston, K. J. , Redish, A. D. , & Gordon, J. A. (2017). Computational nosology and precision psychiatry. Computational Psychiatry, 1, 223.
  19. Friston, K. J. , Stephan, K. E. , Montague, R. , & Dolan, R. J. (2014). Computational psychiatry: The brain as a phantastic organ. The Lancet Psychiatry, 1(2), 148158.
  20. Gerkin, R. , & Omar, C. (2013). Neurounit: Validation tests for neuroscience models. Paper presented at Neuroinformatics, Stockholm, Sweden.
  21. Gleeson, P. , Piasini, E. , Crook, S. , Cannon, R. , Steuber, V. , Jaeger, D. , … Silver, R. A. (2012). The open source brain initiative: Enabling collaborative modelling in computational neuroscience. BMC Neuroscience, 13(1), O7.
  22. Gordon, E. , Williams, L. , Haig, A. R. , Wright, J. , & Meares, R. A. (2001). Symptom profile and gamma processing in schizophrenia. Cognitive Neuropsychiatry, 6(1), 719.
  23. Hamm, J. P. , Bobilev, A. M. , Hayrynen, L. K. , Hudgens-Haney, M. E. , Oliver, W. T. , Parker, D. A. , … Clementz, B. A. (2015). Stimulus train duration but not attention moderates γ-band entrainment abnormalities in schizophrenia. Schizophrenia Research, 165(1), 97102.
  24. Jokeit, H. , & Makeig, S. (1994). Different event-related patterns of gamma-band power in brain waves of fast- and slow-reacting subjects. Proceedings of the National Academy of Sciences, 91(14), 63396343.
  25. Krishnan, G. , Hetrick, W. P. , Brenner, C. , Shekhar, A. , Steffen, A. , & O’Donnell, B. F. (2009). Steady state and induced auditory gamma deficits in schizophrenia. Neuroimage, 47(4), 17111719.
  26. Kwon, J. S. , O’Donnell, B. F. , Wallenstein, G. V. , Greene, R. W. , Hirayasu, Y. , Nestor, P. G. , … McCarley, R. W. (1999). Gamma frequency–range abnormalities to auditory stimulation in schizophrenia. Archives of General Psychiatry, 56(11), 10011005.
  27. Lee, J. , & Park, S. (2005). Working memory impairments in schizophrenia: A meta-analysis. Journal of Abnormal Psychology, 114(4), 599611.
  28. Lee, K.-H. , Williams, L. , Haig, A. , & Gordon, E. (2003). “Gamma (40 hz) phase synchronicity” and symptom dimensions in schizophrenia. Cognitive Neuropsychiatry, 8(1), 5771.
  29. Light, G. A. , Hsu, J. L. , Hsieh, M. H. , Meyer-Gomes, K. , Sprock, J. , Swerdlow, N. R. , & Braff, D. L. (2006). Gamma band oscillations reveal neural network cortical coherence dysfunction in schizophrenia patients. Biological Psychiatry, 60(11), 12311240.
  30. Markou, A. , Chiamulera, C. , Geyer, M. A. , Tricklebank, M. , & Steckler, T. (2009). Removing obstacles in neuroscience drug discovery: The future path for animal models. Neuropsychopharmacology, 34(1), 7489.
  31. Metzner, C. (2017). [Re] modeling gaba alterations in schizophrenia: A link between impaired inhibition and gamma and beta auditory entrainment. ReScience, 3(1).
  32. Metzner, C. , Schweikard, A. , & Zurowski, B. (2016). Multifactorial modeling of impairment of evoked gamma range oscillations in schizophrenia. Frontiers in Computational Neuroscience, 10, Article 89.
  33. Meyer-Lindenberg, A. , & Weinberger, D. R. (2006). Intermediate phenotypes and genetic mechanisms of psychiatric disorders. Nature Reviews Neuroscience, 7(10), 818827.
  34. Montague, P. R. , Dolan, R. J. , Friston, K. J. , & Dayan, P. (2012). Computational psychiatry. Trends in Cognitive Sciences, 16(1), 7280.
  35. Mulert, C. , Kirsch, V. , Pascual-Marqui, R. , McCarley, R. W. , & Spencer, K. M. (2011). Long-range synchrony of gamma oscillations and auditory hallucination symptoms in schizophrenia. International Journal of Psychophysiology, 79(1), 5563.
  36. O’Connell, M. , Barczak, A. , Ross, D. , McGinnis, T. , Schroeder, C. , & Lakatos, P. (2015). Multi-scale entrainment of coupled neuronal oscillations in primary auditory cortex. Frontiers in Human Neuroscience, 9, Article 655.
  37. O’Donnell, B. F. , Hetrick, W. P. , Vohs, J. L. , Krishnan, G. P. , Carroll, C. A. , & Shekhar, A. (2004). Neural synchronization deficits to auditory stimulation in bipolar disorder. Neuroreport, 15(8), 13691372.
  38. Omar, C. , Aldrich, J. , & Gerkin, R. C. (2014). Collaborative infrastructure for test-driven scientific model validation. In Companion proceedings of the 36th International Conference on Software Engineering (pp. 524527). New York, NY: ACM.
  39. Perlis, R. (2011). Translating biomarkers to clinical practice. Molecular Psychiatry, 16(11), 10761087.
  40. Piskulic, D. , Olver, J. S. , Norman, T. R. , & Maruff, P. (2007). Behavioural studies of spatial working memory dysfunction in schizophrenia: A quantitative literature review. Psychiatry Research, 150(2), 111121.
  41. Rass, O. , Krishnan, G. , Brenner, C. A. , Hetrick, W. P. , Merrill, C. C. , Shekhar, A. , & O’Donnel, B. F. (2010). Auditory steady state response in bipolar disorder: Relation to clinical state, cognitive performance, medication status, and substance disorders. Bipolar Disorders, 12(8), 793803.
  42. Sarma, G. P. , Jacobs, T. W. , Watts, M. D. , Ghayoomie, S. V. , Larson, S. D. , & Gerkin, R. C. (2016). Unit testing, model validation, and biological simulation. F1000Research, 5, Article 1946.
  43. Shi, W.-X. (2007). The auditory cortex in schizophrenia. Biological Psychiatry, 61(7), 829830.
  44. Siekmeier, P. J. (2015). Computational modeling of psychiatric illnesses via well-defined neurophysiological and neurocognitive biomarkers. Neuroscience & Biobehavioral Reviews, 57, 365380.
  45. Singh, R. , & Eliasmith, C. (2006). Higher-dimensional neurons explain the tuning and dynamics of working memory cells. Journal of Neuroscience, 26(14), 36673678.
  46. Spencer, K. M. (2012). Baseline gamma power during auditory steady-state stimulation in schizophrenia. Frontiers in Human Neuroscience, 5, Article 190.
  47. Spencer, K. M. , Nestor, P. G. , Niznikiewicz, M. A. , Salisbury, D. F. , Shenton, M. E. , & McCarley, R. W. (2003). Abnormal neural synchrony in schizophrenia. Journal of Neuroscience, 23(19), 74077411.
  48. Spencer, K. M. , Niznikiewicz, M. A. , Nestor, P. G. , Shenton, M. E. , & McCarley, R. W. (2009). Left auditory cortex gamma synchronization and auditory hallucination symptoms in schizophrenia. BMC Neuroscience, 10(1), Article 85.
  49. Spencer, K. M. , Salisbury, D. F. , Shenton, M. E. , & McCarley, R. W. (2008). γ-band auditory steady-state responses are impaired in first episode psychosis. Biological Psychiatry, 64(5), 369375.
  50. Stephan, K. E. , & Mathys, C. (2014). Computational approaches to psychiatry. Current Opinion in Neurobiology, 25, 8592.
  51. Vierling-Claassen, D. , Siekmeier, P. , Stufflebeam, S. , & Kopell, N. (2008). Modeling gaba alterations in schizophrenia: A link between impaired inhibition and altered gamma and beta range auditory entrainment. Journal of Neurophysiology, 99(5), 26562671.
  52. Wang, X.-J. (2001). Synaptic reverberation underlying mnemonic persistent activity. Trends in Neurosciences, 24(8), 455463.
  53. Wang, X.-J. , & Krystal, J. H. (2014). Computational psychiatry. Neuron, 84(3), 638654.
  54. Wang, X.-J. , Tegnér, J. , Constantinidis, C. , & Goldman-Rakic, P. (2004). Division of labor among distinct subtypes of inhibitory neurons in a cortical microcircuit of working memory. Proceedings of the National Academy of Sciences of the United States of America, 101(5), 13681373.
  55. Wilson, T. W. , Hernandez, O. O. , Asherin, R. M. , Teale, P. D. , Reite, M. L. , & Rojas, D. C. (2007). Cortical gamma generators suggest abnormal auditory circuitry in early-onset psychosis. Cerebral Cortex, 18(2), 371378.
  56. Zhang, J. , Ma, L. , Li, W. , Yang, P. , & Qin, L. (2016). Cholinergic modulation of auditory steady-state response in the auditory cortex of the freely moving rat. Neuroscience, 324, 2939.
Language: English
Submitted on: Dec 18, 2017
Accepted on: Apr 1, 2018
Published on: Jul 1, 2018
Published by: MIT Press
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2018 Christoph Metzner, Tuomo Mäki-Marttunen, Bartosz Zurowski, Volker Steuber, published by MIT Press
This work is licensed under the Creative Commons Attribution 4.0 License.