Skip to main content
Have a personal or library account? Click to login
Improving the representation of radiation interception and photosynthesis for climate model applications Cover

Improving the representation of radiation interception and photosynthesis for climate model applications

Open Access
|Jan 2007

References

  1. Aratijo , A. C. , Nobre , A. D. , Kruijt , B. , Elbers , J. A. , Dallarosa , R. and co-authors. 2002. Comparative measurements of carbon dioxide fluxes from two nearby towers in a central Amazonian rainforest: the Manaus LBA site. J. Geophys. Res.-Atmos. 107, art. no.-8090.
  2. Arora , V . 2002 . Modelling vegetation as a dynamic component in soil-vegetation-atmosphere transfer schemes and hydrological models . Rev. Geophys . 40 , 1006 , 10.1029/2001RG00103 .
  3. Atkin , O. K. , Evans , J. R. , Ball , M. C. , Lambers , H. and Pons , T. L. 2000. Leaf respiration of snow gum in the light and dark, interactions between temperature and irradiance. Plant PhysioL 122, 915 923.
  4. Atkin , O. K. , Evans , J. R. and Siebke , K. 1998. Relationship between the inhibition of leaf respiration by light and enhancement of leaf dark respiration following light treatment. Aust. J. Plant PhysioL 25, 437 443.
  5. Aubinet , M. , Heinesch , B. and Longdoz , B . 2002 . Estimation of the carbon sequestration by a heterogeneous forest: night flux corrections, heterogeneity of the site and inter-annual variability . Glob. Change Biol . 8 , 1053 1071 .
  6. Baker , I. T. , Denning , A. S. , Hanan , H. , Berry , J. A. , Collatz , G. J. , and co-authors. 2006. The next generation of the simple biosphere model (SiB3): model formulation and preliminary results. In: Proceed-ings of the 1st iLEAPs Science Conference (eds. A. Reissell and A. Aarflot ). Finish Association for Aerosol Research, Boulder, Colorado, USA.
  7. Baker , T. R. , Phillips, 0. L., Malhi, Y., Almeida, S., Arroyo, L. and co-authors. 2004. Increasing biomass in Amazonian forest plots. Philos. Trans. R. Soc. Lond. Ser B-BioL Sci. 359, 353 365.
  8. Baldocchi , D. D . 2003 . Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future . Glob. Change Biol . 9 , 479 492 .
  9. Baldocchi , D. D. and Harley , P. C . 1995 . Scaling Carbon-dioxide and water-vapor exchange from leaf to canopy in a deciduous forest .2. Model testing and application . Plant Cell Environ . 18 , 1157 1173 .
  10. Bravard , S. and Righi , D . 1989 . Geochemical Differences in an Oxisol Spodosol Toposequence of Amazonia, Brazil . Geoderma 44 , 29 42 .
  11. Brooks , A. and Farquhar , G. D . 1985 . Effect of temperature on the CO2/02 specificity of ribulose 1,5-bisphosphate carboxylase oxyge-nase and the rate of respiration in the light: estimates from gas ex-change measurements on spinach . Planta 165 , 397 406 .
  12. Cabral , O. M. R. , McWilliam , A. L. C. and Roberts , J. M. 1996. In-canopy microclimate of Amazonian forest and estimates of transpiration. In: Amazon Deforestation and Climate (eds. J. H. C. Gash , C. A. Nobre , J. Roberts and R. L. Victoria ). John Wiley & Sons , Chichester, UK.
  13. Carmo , J. B. , Keller , M. , Dias , J. D. , de Camargo , P. B. and Crill , P. 2006. A source of methane from upland forests in the Brazilian Amazon. Geophys. Res. lett. 33 , 10.1029/2005GL025436 .
  14. Carswell , F. E. , Meir , P. , Wandelli , E. V. , Bonates , L. C. M. , Kruijt , B. and co-authors. 2000. Photosynthetic capacity in a central Amazonian rain forest. Tree PhysioL 20, 179 186.
  15. Chambers , J. , Tribuzy , E. S. , Toledo , L. C. , Crispim , B. F. , Higuchi , N. and co-authors. 2004. Respiration from a tropical forest ecosystem: partitioning of sources and low carbon use efficiency. Ecol. Appl. 14, S72-S88.
  16. Chambers , J. Q. , Schimel , J. P. and Nobre , A. D . 2001 . Respiration from coarse wood litter in central Amazon forests . Biogeochemistiy 52 , 115 131 .
  17. Chen , J. M. , Rich , P. M. , Gower , S. T. , Norman , J. M. and Plummer , S . 1997. Leaf area index of boreal forests: Theory, techniques and measurements. J. Geophys. Res.-Atmos. 102 , 29429 29443.
  18. Collatz , G. J. , Ball , J. T. , Grivet , C. and Berry , J. A . 1991 . Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer . Agric. For MeteoroL 54 , 107 136 .
  19. Collatz , G. J. , Berry , J. A. , Farquhar , G. D. and Pierce , J . 1990 . The relationship between the Rubisco reaction-mechanism and models of photosynthesis . Plant Cell Environ . 13 , 219 225 .
  20. Collatz , G. J. , Ribas-Carbo , M. and Berry , J. A . 1992 . Coupled photo-synthesis stomatal conductance model for leaves of C4 plants . AusL J. Plant PhysioL 19 , 519 538 .
  21. Cox , P. M. , Betts , R. A. , Collins , M. , Harris , P. P. , Huntingford, C. and and co-authors. 2004. Amazonian forest dieback under climate-carbon cycle projections for the 21st century. Theor AppL ClimatoL 78, 137 156.
  22. Cox , P. M. , Betts , R. A. , Jones , C. D. , Spall , S. A. and Totterdell , I. J. 2000. Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model. Nature 408, 750 750.
  23. Cox , P. M. , Huntingford , C. and Harding , R. J. 1998. A canopy con-ductance and photosynthesis model for use in a GCM land surface scheme. J. Hydrol. 213, 79 94.
  24. Davidson , E. A. , Savage , K. , Bolstad , P. , Clark , D. A. , Curtis , P. S. and co-authors. 2002. Belowground carbon allocation in forests estimated from litterfall and IRGA-based soil respiration measurements. Agric. For MeteoroL 113, 39 51.
  25. de Pury , D. G. G. and Farquhar , G. D . 1997 . Simple scaling of photosyn-thesis from leaves to canopies without the errors of big-leaf models . Plant Cell Environ . 20 , 537 557 .
  26. de Wit , C. T . 1965. Photosynthesis of leaf canopies. Agricultural research report. No. 663. In: PUDOC, Wageningen, The Netherlands.
  27. Domingues , T. E , Berry , J. A. , Martinelli , L. A. , Ometto , J. P. H. B. and Ehleringer , J. R . 2005 . Parameterization of canopy structure and leaf-level gas exchange for an Eastern Amazonian tropical rain for-est (Tapajos National Forest, Para, Brazil) . Earth Interactions 9 , 1 23 .
  28. Duncan , W. G. , Loomis , R. S. , Williams , W. A. and Hanau , R . 1967 . A model for simulating photosynthesis in plant communities . Hi/gardia 38 , 181 205 .
  29. Ehleringer , J. and Pearcy , R. W . 1983 . Variation in Quantum Yield for CO2 Uptake among C3 and C4 Plants . Plant PhysioL 73 , 555 559 .
  30. Ehleringer , J. R. , Lin , Z. F. , Field , C. B. , Sun , G. C. and Kuo , C. Y . 1987 . Leaf carbon isotope ratios of plants from a subtropical monsoon forest . Oecologia 72 , 109 114 .
  31. Falge , E. , Reth , S. , Bruggemann , N. , Butterbach-Bahl , K. , Goldberg , V. and co-authors. 2005. Comparison of surface energy exchange models with eddy flux data in forest and grassland ecosystems of Germany. EcoL Model. 188, 174 216.
  32. Farquhar , G. D. , Ehleringer , J. R. and Hubick , K. T . 1989 . Carbon Isotope Discrimination and Photosynthesis . Annu. Rev. Plant PhysioL Plant Molec. Biol . 40 , 503 537 .
  33. Farquhar , G. D. , Oleary , M. H. and Berry , J. A . 1982 . On the rela-tionship between carbon isotope discrimination and the inter-cellular carbon-dioxide concentration in leaves . Aust. J. Plant Physiol . 9 , 121 137 .
  34. Figueroa , S. N. and Nobre , C . 1990 . Precipitation distribution over cen-tral and western tropical South America . Climanalise 5 , 36 40 .
  35. Finnigan , J. J. , Clement , R. , Malhi , Y. , Leuning , R. and Cleugh , H. A . 2003 . A re-evaluation of long-term flux measurement techniques-part I: averaging and coordinate rotation . Bound.-Layer Meteor 107 , 1 48 .
  36. Friend , A. D. and Kiang , N.Y . 2005 . Land surface model development for the GISS GCM: Effects of improved canopy physiology on simulated climate . J. Clim . 18 , 2883 2902 .
  37. Goudriaan , J . 1977 . Crop Micrometeorology: A Simulation Study . Centre for Agricultural Publishing and Documentation , Wageningen , The Netherlands , pp. 249 .
  38. Hoefnagel , M. H. N. , Atkin, 0. K. and Wislcich, J. T. 1998. Interdepen-dence between chloroplasts and mitochondria in the light and the dark. Biochimica Et Biophysica Acta-Bioenergetics 1366, 235 255.
  39. Jacobs , C . 1994 . Direct Impact of atmospheric CO2 enrichment on regional transpiration . In: Wageningen Agricultural Univesity , Wageningen , The Netherlands .
  40. Janssens , I. A. , Lankreijer , H. , Matteucci , G. , Kowalski , A. S. , Buchmann , N. and co-authors. 2001. Productivity overshadows tem-perature in determining soil and ecosystem respiration across Euro-pean forests. Glob. Change Biol. 7, 269 278.
  41. Jogireedy , V , Cox , P. M. , Huntingford , C. , Harding , R. J. and Mercaco , L. M . 2006. An improved description of canopy light intercep-tion for use in a GCM land-surface scheme: calibration and testing against carbon fluxes at a coniferous forest. In: Haddley Centre Technical Note 63 Available at ( http : //www.metoffice.com/research/ hadleycentre/pubs/HCTN/index.html) .
  42. Kelly , N. , Turnbull , T. , Bren , L. and Adams , A . 2004. The Geometry of light capture in plantation Eucaliptus globulus labill. In: Proceed-ings of the 4th International Workshop on Functional-Structural Plant Models (eds. C. Godin , J. Hanan , W. Kurth , A. Lacointe , A. Takenalca , P. Prusinlciewicz , T. M. DeJong , B. Beveridge and B. Andrieu ). UMR AMAP , Montpellier , France.
  43. Kruijt , B. , Elbers , J. A. , von Randow , C. , Araujo , A. C. , Oliveira , P. J. and co-authors. 2004. The robustness of eddy correlation fluxes for Amazon rain forest conditions. EcoL Appl. 14, S101-S113. Kucharik , C. J. , Norman , J. M. and Gower , S. T. 1998. Measurements of leaf orientation, light distribution and sunlit leaf area in a boreal aspen forest. Agric. For. MeteoroL 91, 127 148.
  44. Lloyd , J. and Taylor , J. A . 1994 . On the temperature dependence of soil respiration . FuncL EcoL 8 , 315 323 .
  45. Lloyd , J. , Wong , S. C. , Styles , J. M. , Batten , D. , Priddle , R. and co-authors. 1995. Measuring and modelling whole-tree gas exchange. Aust. J. Plant PhysioL 22, 987 1000.
  46. Luizao , R. C. C. , Luizao , E J. , Paiva , R. Q. , Monteiro , T. F. , Sousa , L. S. and co-authors. 2004. Variation of carbon and nitrogen cycling processes along a topographic gradient in a central Amazonian forest. Glob. Change Biol. 10, 592 600.
  47. Massman , W. J. and Lee , X . 2002 . Eddy covariance flux corrections and uncertainties in long-term studies of carbon and energy exchanges . Agric. For MeteoroL 113 , 121 144 .
  48. McWilliam , A. L. C. , Roberts , J. M. , Cabral , O. M. R. , Leitao , M. , Decosta , A. C. L. , and co-authors. 1993. Leaf-Area Index and Above-ground Biomass of Terra-Firme Rain-Forest and Adjacent Clearings in Amazonia. FuncL Ecol. 7, 310 317.
  49. Medlyn , B. , Barrett , D. , Landsberg , J. , Sands , P. and Clement , R. 2003. Conversion of canopy intercepted radiation to photosynthate: review of modelling approaches for regional scales. FuncL Plant Biol. 30, 153 169.
  50. Meir , P. , Grace , J. and Miranda , A. C. 2000. Photographic method to measure the vertical distribution of leaf area density in forests. Agric. For MeteoroL 102, 105 111.
  51. Meir , P. , Kruijt , B. , Broadmeadow , M. , Barbosa , E. , Kull, 0. and co-authors. 2002. Acclimation of photosynthetic capacity to irradiance in tree canopies in relation to leaf nitrogen concentration and leaf mass per unit area. Plant Cell Environ. 25, 343 357.
  52. Norman , J. M . 1980 . Interfacing leaf and canopy light interception mod-els. In: Predicting photosynthesis for ecosystem models ( eds. J. D. Hesketh & J. W. Jones ). CRC Press, Boca Raton, Fl, Vol . 2 , pp 49 67 .
  53. Ometto , J. P. H. B. , Ehleringer , J. H. , Domingues , T. F. , Berry , J. A. , Ishida , F. Y. , and co-authors. 2006. The stable carbon and nitrogen isotopic composition of vegetation in tropical forests of the Amazon region, Brazil. Biogeochem. 79, 251 274.
  54. Ranquin de Merona , J. M. , Prance , G. T. , Hutchings , R. W. , Freitas da Silva , M. , Rodriguez , W. A. and co-authors. 1992. Preliminary results of a large scale tree inventory of upland rain forest in the central amazon. Acta Amazonica 22, 494 534.
  55. Sellers , P. J . 1985 . Canopy reflectance, photosynthesis and transpiration . Int. J. Remote Sens . 6 , 1335 1372 .
  56. Sellers , P. J. , Berry , J. A. , Collatz , G. J. , Field , C. B. and Hall , E G. 1992. Canopy reflectance, photosynthesis, and transpiration HI. A reanalysis using improved leaf models and a new canopy integration scheme. Remote Sens. Environ. 42, 187 216.
  57. Shuttleworth , W. J . 1989 . Micrometeorology of temperate and tropical forest . Philos. Trans. R. Soc. Lond. Ser B-BioL Sci . 324 , 299 334 .
  58. Silva de Souza , J. 2004 . Dinamica espacial e temporal do fluxo de CO2 do solo em floresta de terra firme na amazonia central . Master Thesis. In: Universidad Federal do Amazonas, Manaus , Brazil .
  59. Sinclair , T. R. , Murphy , C. E. , Jr. and Knoerr , K. R . 1976 . Development and evaluation of simplified models for simulating canopy photosyn-thesis and transpiration . J. AppL EcoL 13 , 813 829 .
  60. Smolander , H . 1984 . Measurement of fluctuating irradiance in field stud-ies of photosynthesis . Acta Forestalia Fennica 187 , 1 56 .
  61. Sotta , E. D. , Meir , R , Malhi , Y. , Nobre , A. D. , Hodnett, M. and co-authors. 2004. Soil CO2 efflux in a tropical forest in the central Ama-zon. Glob. Change Biol. 10, 601 617.
  62. Wang , Y. P . 2003 . A comparison of three different canopy radiation models commonly used in plant modelling . FuncL Plant Biol . 30 , 143 152 .
  63. Wang , Y. P. and Leuning , R . 1998 . A two-leaf model for canopy conduc-tance, photosynthesis and partitioning of available energy I: model description and comparison with a multilayered model . Agric. For Meteorol . 91 , 89 111 .
  64. Williams , M. , Malhi , Y. , Nobre , A. D. , Rastetter , E. B. , Grace , J. and co-authors. 1998. Seasonal variation in net carbon exchange and evap-otranspiration in a Brazilian rain forest: a modelling analysis. Plant Cell Environ. 21, 953 968.
  65. Williams , M. , Rastetter , E. B. , Fernandes , D. N. , Goulden , M. L. , Wofsy , S. C. and co-authors. 1996. Modelling the soil-plant-atmosphere con-tinuum in a Quercus-Acer stand at Harvard forest: The regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic prop-erties. Plant Cell Environ. 19, 911 927.
  66. Wilson , K. , Goldstein , A. , Falge , E. , Aubinet , M. , Baldocchi , D. and co-authors. 2002. Energy balance closure at FLUXNET sites. Agric. For MeteoroL 113, 223 243.
  67. Wirth , R. , Weber , B. and Ryel , R. J . 2001 . Spatial and temporal variability of canopy structure in a tropical moist forest . Acta Oecologica-Int. J. EcoL 22 , 235 244 .
  68. Wohlfahrt , G. , Bahn , M. , Haslwanter , A. , Newesely , C. and Cernusca , A . 2005 . Estimation of daytime ecosystem respiration to determine gross primary production of a mountain meadow . Agric. For MeteoroL 130 , 13 25 .
Language: English
Page range: 553 - 565
Submitted on: Apr 25, 2006
Accepted on: Nov 20, 2006
Published on: Jan 1, 2007
Published by: Stockholm University Press
In partnership with: Paradigm Publishing Services

© 2007 Lina M. Mercado, Chris Huntingford, John H. C. Gash, Peter M. Cox, Venkata Jogireddy, published by Stockholm University Press
This work is licensed under the Creative Commons Attribution 4.0 License.